MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-181-P2b2

Family name MIR-181 (all species)
Seed ACAUUCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-181b-2
Paralogues Gmo-Mir-181-P1a1  Gmo-Mir-181-P1b2  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Gmo-Mir-181-P2a1  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2 
Orthologues Aca-Mir-181-P2b  Ami-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cli-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Ete-Mir-181-P2b  Gga-Mir-181-P2b  Gja-Mir-181-P2b  Hsa-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pbv-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Spt-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Xtr-Mir-181-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_849: 58501-58560 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2b2)		 Mir-181-P1b2 GeneScaffold_849: 58123-58181 [+] UCSC Ensembl
Mir-181-P2b2 GeneScaffold_849: 58501-58560 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACAGAGCCCCUUAUCUUAAGGCUGCACUAAACAUUCAUUGCUGUCGGUGGGUUUCUGGUUGAAAUGACUCAUUGACGAAUGAAUGCAGACUGCGGUACAACACGUCACUAUAGGGGCUC
Get precursor sequence
Structure
        10        20          30        40        50        60
CACAGAGCCCCUUAUCUUAAG--|     CUAAA        GC            UCUGG 
                       GCUGCA     CAUUCAUU  UGUCGGUGGGUU     U
                       UGGCGU     GUAAGUAA  GCAGUUACUCAG     U
CUCGGGGAUAUCACUGCACAACA^     CAGAC        --            UAAAG 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-181-P2b2_5p
mirBase accessionMIMAT0044134
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
Star sequence

Gmo-Mir-181-P2b2_3p*
mirBase accessionNone
Sequence 
38- CUCAUUGACGAAUGAAUGCAGA -60
Get sequence