MirGeneDB ID | Lch-Mir-181-P2b |
---|---|
Family name | MIR-181 (all species) |
Seed | ACAUUCA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-181-P1a Lch-Mir-181-P1b Lch-Mir-181-P1c Lch-Mir-181-P2a Lch-Mir-181-P2c |
Orthologues | Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126572.1: 3682113-3682171 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | CUGAAUGUUUGAACAUUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUACUUUAGAUCAACUCACUGAUCAAUGAAUGCAAACUGCAGUCCAGAGCACACAAAAAAAAACAAGet precursor sequence |
Structure | 10 20 30 40 50 CUGAAUGUUUGAACAUUAA- -| AUCAA CU UACUU UGG CUGCA CAUUCAUUG GUCGGUGGGUU \ ACC GACGU GUAAGUAAC UAGUCACUCAA U AACAAAAAAAAACACACGAG U^ CAAAC -- CUAGA 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Lch-Mir-181-P2b_5p (predicted) |
mirBase accession | None |
Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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|
Star sequence | Lch-Mir-181-P2b_3p* (predicted) |
mirBase accession | None |
Sequence |
37- CUCACUGAUCAAUGAAUGCAAA -59
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|