Mir-181-P2b

MirGeneDB ID

Mmu-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-181b-2

Paralogues

Mmu-Mir-181-P1a Mmu-Mir-181-P1b Mmu-Mir-181-P1c Mmu-Mir-181-P2a Mmu-Mir-181-P2c

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr2: 38853845-38853904 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2b)

Mir-181-P1b chr2: 38852741-38852806 [+] UCSC Ensembl
Mir-181-P2b chr2: 38853845-38853904 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCAAAAGGAAACAUUGAUGGCUGCACUCAACAUUCAUUGCUGUCGGUGGGUUUGAAUGUCAACCAACUCACUGAUCAAUGAAUGCAAACUGCGGGCCAAAAAACGCAAAGAAACAAAA

Get precursor sequence

Structure

        10         20         30        40        50        60
CAUCAAAAGGAAACAUUGA-   -|    CUCAA         CU           UGAAU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     G
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     U
AAAACAAAGAAACGCAAAAA   G^    CAAAC         --           CCAAC 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-181-P2b_5p

mirBase accession

MIMAT0000673

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000673
TargetScanVert: mmu-miR-181b-5p
miRDB: MIMAT0000673

Star sequence

Mmu-Mir-181-P2b_3p*

mirBase accession

MIMAT0017084

Sequence

38- CUCACUGAUCAAUGAAUGCAAA -60

Get sequence

Proposed targets

TargetScanVert: mmu-miR-181b-2-3p
miRDB: MIMAT0017084