| MirGeneDB ID | Cja-Mir-181-P2b |
|---|---|
| Family name | MIR-181 (all species) |
| Seed | ACAUUCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-181-P1a Cja-Mir-181-P1b Cja-Mir-181-P1c Cja-Mir-181-P2a Cja-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 170354341-170354400 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CACCAACUGAAAACACUGAUGGCUGCACUCAACAUUCAUUGCUGUCGGUGGGUUUGAGUCUGAAUCAACUCACUGAUCGAUGAAUGCAAACUGCGGACCAAACAACCCAUAGGAAGCAAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CACCAACUGAAAACACUGA- -| CUCAA CU UGAGU UGG CUGCA CAUUCAUUG GUCGGUGGGUU C ACC GGCGU GUAAGUAGC UAGUCACUCAA U AAACGAAGGAUACCCAACAA A^ CAAAC -- CUAAG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Cja-Mir-181-P2b_5p |
| mirBase accession | None |
| Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
|
| Star sequence | Cja-Mir-181-P2b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CUCACUGAUCGAUGAAUGCAAA -60
Get sequence
|
