Mir-181-P1b

MirGeneDB ID

Cja-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-181-P1a Cja-Mir-181-P1c Cja-Mir-181-P2a Cja-Mir-181-P2b Cja-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021915.1: 170353161-170353222 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACCAGGCCAACCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAAAACCACUGACCGUUGACUGUACCUUGGGGUCCUUAAUGACAACACUACAUUUC

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Structure

        10          20        30        40        50        60  
UACCAGGCCAACCUUCA--|            A   U      CU       A    GGGAUU 
                   GAGGACUCCAAGG ACA UCAACG  GUCGGUG GUUU      \
                   UUCCUGGGGUUCC UGU AGUUGC  CAGUCAC CAAA      U
CUUUACAUCACAACAGUAA^            A   C      --       -    AAAAAG 
120       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-181-P1b_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

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Star sequence

Cja-Mir-181-P1b_3p*

mirBase accession

None

Sequence

40- ACCACUGACCGUUGACUGUACC -62

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