| MirGeneDB ID | Cja-Mir-181-P1b |
|---|---|
| Family name | MIR-181 (all species) |
| Seed | ACAUUCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-181-P1a Cja-Mir-181-P1c Cja-Mir-181-P2a Cja-Mir-181-P2b Cja-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 170353161-170353222 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UACCAGGCCAACCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAAAACCACUGACCGUUGACUGUACCUUGGGGUCCUUAAUGACAACACUACAUUUCGet precursor sequence |
| Structure | 10 20 30 40 50 60 UACCAGGCCAACCUUCA--| A U CU A GGGAUU GAGGACUCCAAGG ACA UCAACG GUCGGUG GUUU \ UUCCUGGGGUUCC UGU AGUUGC CAGUCAC CAAA U CUUUACAUCACAACAGUAA^ A C -- - AAAAAG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-181-P1b_5p |
| mirBase accession | None |
| Sequence |
0- AACAUUCAACGCUGUCGGUGAGUUU -25
Get sequence
|
| Star sequence | Cja-Mir-181-P1b_3p* |
| mirBase accession | None |
| Sequence |
40- ACCACUGACCGUUGACUGUACC -62
Get sequence
|
