Mir-181-P1b

MirGeneDB ID

Tgu-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-181a-2

Paralogues

Tgu-Mir-181-P1a Tgu-Mir-181-P2a Tgu-Mir-181-P2b

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

17: 10778915-10778975 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P1b 17: 10778915-10778975 [+] UCSC Ensembl
Mir-181-P2b 17: 10779964-10780023 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUACAGCCAUCUUUGGAUAGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGAACUAGAAAAAACCAUCGACCGUUGACUGUACCUUGAGGUUUAUCACAAACCCUCUGUUAAAU

Get precursor sequence

Structure

        10         20         30        40        50        60 
GUGUACAGCCAUCUUUG-   -|       UGA   U      CU       A  UUGAGAA 
                  GAU AGCUUCAG   ACA UCAACG  GUCGGUG GU       C
                  CUA UUGGAGUU   UGU AGUUGC  CAGCUAC CA       U
UAAAUUGUCUCCCAAACA   U^       CCA   C      --       -  AAAAAGA 
 .       110       100        90        80           70