Mir-181-P1b

MirGeneDB ID

Bta-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-181a-2

Paralogues

Bta-Mir-181-P1a Bta-Mir-181-P1c Bta-Mir-181-P2a Bta-Mir-181-P2b Bta-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037338.1: 95709011-95709070 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P1b NC_037338.1: 95709011-95709070 [+] UCSC Ensembl
Mir-181-P2b NC_037338.1: 95710203-95710262 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAGGACCCAGUCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAACCACCGACCGUUGACUGUACCUUGGGUUCCUUACAGACAACACUAUAUUUC

Get precursor sequence

Structure

        10          20        30        40        50        60 
CCAGGACCCAGUCUUCA--|    CU      A   U      CU       A  UUGGGAU 
                   GAGGA  CCAAGG ACA UCAACG  GUCGGUG GU       \
                   UUCCU  GGUUCC UGU AGUUGC  CAGCCAC CA       U
CUUUAUAUCACAACAGACA^    UG      A   C      --       -  AAAAAGU 
.       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-181-P1b_5p

mirBase accession

MIMAT0003543

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-181a

Star sequence

Bta-Mir-181-P1b_3p*

mirBase accession

None

Sequence

38- ACCACCGACCGUUGACUGUACC -60

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