Mir-181-P1b

MirGeneDB ID

Cpi-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-181a-2

Paralogues

Cpi-Mir-181-P1a Cpi-Mir-181-P1c Cpi-Mir-181-P2a Cpi-Mir-181-P2b Cpi-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584413: 821488-821548 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P1b JH584413: 821488-821548 [+] UCSC Ensembl
Mir-181-P2b JH584413: 823972-824031 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUACGUAGCAGCCUUCAGAUAGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGAAUUAGAAAAAACCAUCGACCGUUGACUGUACCUUGAGGUAUAUCACAGACACAUUGCUAAAU

Get precursor sequence

Structure

        10         20         30        40        50        60 
GUACGUAGCAGCCUUCA-    -|      UGA   U      CU       A  UUGAGAA 
                  GAUA GCUUCAG   ACA UCAACG  GUCGGUG GU       U
                  CUAU UGGAGUU   UGU AGUUGC  CAGCUAC CA       U
UAAAUCGUUACACAGACA    A^      CCA   C      --       -  AAAAAGA 
 .       110       100        90        80           70