MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-181-P1b1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-181-P1a1  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2  Tni-Mir-181-P2a1  Tni-Mir-181-P2b1  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1b  Ami-Mir-181-P1b  Bta-Mir-181-P1b  Cfa-Mir-181-P1b  Cli-Mir-181-P1b  Cmi-Mir-181-P1b  Cpi-Mir-181-P1b  Cpo-Mir-181-P1b  Dno-Mir-181-P1b  Ete-Mir-181-P1b  Gga-Mir-181-P1b  Gja-Mir-181-P1b  Hsa-Mir-181-P1b  Lch-Mir-181-P1b  Loc-Mir-181-P1b  Mdo-Mir-181-P1b  Mml-Mir-181-P1b  Mmu-Mir-181-P1b  Mun-Mir-181-P1b  Oan-Mir-181-P1b  Ocu-Mir-181-P1b  Pbv-Mir-181-P1b  Rno-Mir-181-P1b  Sha-Mir-181-P1b  Spt-Mir-181-P1b  Sto-Mir-181-P1b  Tgu-Mir-181-P1b  Xtr-Mir-181-P1b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 59809509-59809568 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACUAACCCACGUCCAGGCGCCAACGGUGAACAUUCAACGCUGUCGGUGAGUUUGACACUGAACGAAACCAUCGACCGUUGACUGUACCCCGAGGGCGACCGCGAGGGCGGCCGCGAGG
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Structure
        10          20        30        40        50        60 
AGACUAACCCACGUCCA-  -|   AA   UGA   U      CU       A    GACAC 
                  GG CGCC  CGG   ACA UCAACG  GUCGGUG GUUU     \
                  CC GCGG  GCC   UGU AGUUGC  CAGCUAC CAAA     U
GGAGCGCCGGCGGGAGCG  A^   GA   CCA   C      --       -    GCAAG 
.       110       100        90        80           70
Deep sequencing
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CommentThere are Dicer cut +1 and +2 on the 3p arm.
3' NTU Unknown
MotifsNo
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-181-P1b1_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Tni-Mir-181-P1b1_3p* (predicted)
mirBase accessionNone
Sequence 
38- ACCAUCGACCGUUGACUGUACC -60
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