MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-181-P1c1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-181-P1a1  Tni-Mir-181-P1b1  Tni-Mir-181-P1c2  Tni-Mir-181-P2a1  Tni-Mir-181-P2b1  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15: 5125424-5125490 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGCCCUCCCCGCCCGGCGUGCCUCGGCAAACAUUCAACGCUGUCGGUGAGUUUUUGGUAUGGGUCCCAUAAAAACCAUCGACCGUUGACUGUGCCCCGCGGCUCACCCGUACCACCAGGAAGGGG
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Structure
        10        20          30        40        50        60    
AAAGCCCUCCCCGCCCGGCGU--|  U   CAA   U      CU       A    UUGGUAUG 
                       GCC CGG   ACA UCAACG  GUCGGUG GUUU        G
                       CGG GCC   UGU AGUUGC  CAGCUAC CAAA        G
GGGGAAGGACCACCAUGCCCACU^  C   CCG   C      --       -    AAUACCCU 
     120       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-181-P1c1_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Tni-Mir-181-P1c1_3p*
mirBase accessionNone
Sequence 
45- ACCAUCGACCGUUGACUGUGCC -67
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