MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-181a-1
Paralogues Pbv-Mir-181-P1b  Pbv-Mir-181-P2a  Pbv-Mir-181-P2b  Pbv-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953590.1: 288472-288533 [+]
Clustered miRNAs
(< 50kb from Mir-181-P1c)
Mir-181-P1c KE953590.1: 288472-288533 [+]
Mir-181-P2c KE953590.1: 289011-289073 [+]
Precursor
(pre-Mir +30nt flank)
UCUCUUCACAACUGACAAAAGUUCUCAGGGAACAUUCAACGCUGUCGGUGAGUUUUGUCAGUGGGAUUAAACCAUCGACUGUUGAGUGUACCCUGCGGCCUUUGCAGACGCUGGAAGUAAAG
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Structure
        10          20        30        40        50        60  
UCUCUUCACAACUGACA--|   UU U     A          CU       A  UUUGUCAG 
                   AAAG  C CAGGG ACAUUCAACG  GUCGGUG GU        \
                   UUUC  G GUCCC UGUGAGUUGU  CAGCUAC CA        U
GAAAUGAAGGUCGCAGACG^   CG C     A          --       -  AAUUAGGG 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Pbv-Mir-181-P1c_5p

mirBase accessionMIMAT0038975
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Pbv-Mir-181-P1c_3p*

mirBase accessionMIMAT0038976
Sequence
40- ACCAUCGACUGUUGAGUGUACC -62
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