Mir-181-P1c

MirGeneDB ID

Pbv-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-181a-1

Paralogues

Pbv-Mir-181-P1b Pbv-Mir-181-P2a Pbv-Mir-181-P2b Pbv-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE953590.1: 288472-288533 [+]

Clustered miRNAs
(< 50kb from Mir-181-P1c)

Mir-181-P1c KE953590.1: 288472-288533 [+]
Mir-181-P2c KE953590.1: 289011-289073 [+]

Precursor
(pre-Mir +30nt flank)

UCUCUUCACAACUGACAAAAGUUCUCAGGGAACAUUCAACGCUGUCGGUGAGUUUUGUCAGUGGGAUUAAACCAUCGACUGUUGAGUGUACCCUGCGGCCUUUGCAGACGCUGGAAGUAAAG

Get precursor sequence

Structure

        10          20        30        40        50        60  
UCUCUUCACAACUGACA--|   UU U     A          CU       A  UUUGUCAG 
                   AAAG  C CAGGG ACAUUCAACG  GUCGGUG GU        \
                   UUUC  G GUCCC UGUGAGUUGU  CAGCUAC CA        U
GAAAUGAAGGUCGCAGACG^   CG C     A          --       -  AAUUAGGG 
120       110       100        90        80           70