Mir-181-P2a

MirGeneDB ID

Pbv-Mir-181-P2a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-181b-1

Paralogues

Pbv-Mir-181-P1b Pbv-Mir-181-P1c Pbv-Mir-181-P2b Pbv-Mir-181-P2c

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xtr-Mir-181-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE954498.1: 230963-231022 [+]

Precursor
(pre-Mir +30nt flank)

CACUUAUAUCCACAAAAAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUUUGUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCCACAUUUUACAAUCACAGCC

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Structure

        10        20         30        40        50        60 
CACUUAUAUCCACAAAAAAA-|      AUCAA         CUG           AACUU 
                     GGUCACA     CAUUCAUUG   UCGGUGGGUUU     U
                     CCGGUGU     GUAAGUAAC   AGUCACUCGAA     G
CCGACACUAACAUUUUACACC^      CAAC-         A--           CAGGU 
.       110       100        90         80          70

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Yes

Motifs

Tissue expression

To

Mature sequence

Pbv-Mir-181-P2a_5p

mirBase accession

MIMAT0038977

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUUU -25

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Star sequence

Pbv-Mir-181-P2a_3p*

mirBase accession

MIMAT0038978

Sequence

39- GCUCACUGAACAAUGAAUGCA -60

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