MirGeneDB ID | Pbv-Mir-181-P2a |
Family name |
MIR-181 (all species) |
Seed |
ACAUUCA |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
pbv-mir-181b-1
|
Paralogues |
Pbv-Mir-181-P1b
Pbv-Mir-181-P1c
Pbv-Mir-181-P2b
Pbv-Mir-181-P2c
|
Orthologues |
Aca-Mir-181-P2a
Ami-Mir-181-P2a
Bta-Mir-181-P2a
Cfa-Mir-181-P2a
Cja-Mir-181-P2a
Cli-Mir-181-P2a
Cmi-Mir-181-P2a
Cpi-Mir-181-P2a
Cpo-Mir-181-P2a
Dno-Mir-181-P2a
Dre-Mir-181-P2a1
Dre-Mir-181-P2a2
Eca-Mir-181-P2a
Ete-Mir-181-P2a
Gga-Mir-181-P2a
Gja-Mir-181-P2a
Gmo-Mir-181-P2a1
Hsa-Mir-181-P2a
Laf-Mir-181-P2a
Lch-Mir-181-P2a
Loc-Mir-181-P2a
Mal-Mir-181-P2a1
Mdo-Mir-181-P2a
Mml-Mir-181-P2a
Mmr-Mir-181-P2a
Mmu-Mir-181-P2a
Mun-Mir-181-P2a
Neu-Mir-181-P2a
Oan-Mir-181-P2a
Ocu-Mir-181-P2a
Pab-Mir-181-P2a
Rno-Mir-181-P2a
Sha-Mir-181-P2a
Spt-Mir-181-P2a
Sto-Mir-181-P2a
Tgu-Mir-181-P2a
Tni-Mir-181-P2a1
Xla-Mir-181-P2a3
Xla-Mir-181-P2a4
Xtr-Mir-181-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE954498.1: 230963-231022 [+]
|
Precursor (pre-Mir +30nt flank) |
CACUUAUAUCCACAAAAAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUUUGUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCCACAUUUUACAAUCACAGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CACUUAUAUCCACAAAAAAA-| AUCAA CUG AACUU
GGUCACA CAUUCAUUG UCGGUGGGUUU U
CCGGUGU GUAAGUAAC AGUCACUCGAA G
CCGACACUAACAUUUUACACC^ CAAC- A-- CAGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on the 3p arm. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pbv-Mir-181-P2a_5p |
mirBase accession | MIMAT0038977 |
Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUUU -25
Get sequence
|
Star sequence |
Pbv-Mir-181-P2a_3p* |
mirBase accession | MIMAT0038978 |
Sequence |
39- GCUCACUGAACAAUGAAUGCA -60
Get sequence
|