Mir-181-P2a1

MirGeneDB ID

Dre-Mir-181-P2a1

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-181b-3

Paralogues

Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Dre-Mir-181-P1b2 Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Dre-Mir-181-P2a2 Dre-Mir-181-P2b2 Dre-Mir-181-P2c1 Dre-Mir-181-P2c2

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xtr-Mir-181-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr22: 22825805-22825864 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2a1)

Mir-181-P2a1 chr22: 22825805-22825864 [-] UCSC Ensembl
Mir-181-P1a1 chr22: 22826011-22826074 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUUUGAAAACUACAACAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGGAUUGUAAAAGAAAGCUCACUGAACAAUGAAUGCAACUGUGUCCCAGAUUUACAUCUCGCAAAGU

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Structure

        10        20         30        40        50        60 
ACUUUGAAAACUACAACAAA-| U    AUCAA         CUG          GGAUUG 
                     GG CACA     CAUUCAUUG   UCGGUGGGUU      U
                     CC GUGU     GUAAGUAAC   AGUCACUCGA      A
UGAAACGCUCUACAUUUAGAC^ U    CAAC-         A--          AAGAAA 
.       110       100        90         80          70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-181-P2a1_5p

mirBase accession

MIMAT0001270

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Dre-Mir-181-P2a1_3p*

mirBase accession

MIMAT0048656

Sequence

40- CUCACUGAACAAUGAAUGCA -60

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