MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-181-P2a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-181-P1a  Gja-Mir-181-P1b  Gja-Mir-181-P1c  Gja-Mir-181-P2b 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cja-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Eca-Mir-181-P2a  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Laf-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmr-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Neu-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pab-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015169787.1: 910004-910064 [-]
Precursor
(pre-Mir +30nt flank)
CUUCAUACACCACAAAAAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUAUGUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCCACUUUUUACAAUCACGGUCA
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Structure
        10        20          30        40        50        60 
CUUCAUACACCACAAAAAAA--|      AUCAA         CUG          UAACUA 
                      GGUCACA     CAUUCAUUG   UCGGUGGGUU      U
                      CCGGUGU     GUAAGUAAC   AGUCACUCGA      G
ACUGGCACUAACAUUUUUCACC^      CAAC-         A--          ACAGGU 
 .       110       100        90         80          70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU Yes
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-181-P2a_5p
mirBase accessionNone
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Gja-Mir-181-P2a_3p*
mirBase accessionNone
Sequence 
40- CUCACUGAACAAUGAAUGCAA -61
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