Mir-181-P2a

MirGeneDB ID

Cfa-Mir-181-P2a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-181b-1

Paralogues

Cfa-Mir-181-P1a Cfa-Mir-181-P1b Cfa-Mir-181-P1c Cfa-Mir-181-P2b Cfa-Mir-181-P2c

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xtr-Mir-181-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr7: 4055651-4055710 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2a)

Mir-181-P1a chr7: 4055465-4055526 [+] UCSC Ensembl
Mir-181-P2a chr7: 4055651-4055710 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGAGAUUAUUUUUUCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGAACUGUGUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCGCUUUUUGCAGACACAAUCC

Get precursor sequence

Structure

        10        20         30        40        50        60 
GCAGAGAUUAUUUUUUCAAA-|      AUCAA         CUG          GAACUG 
                     GGUCACA     CAUUCAUUG   UCGGUGGGUU      U
                     CCGGUGU     GUAAGUAAC   AGUCACUCGA      G
CCUAACACAGACGUUUUUCGC^      CAAC-         A--          ACAGGU 
.       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-181-P2a_5p

mirBase accession

MIMAT0006708

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-181b
miRDB: MIMAT0006708

Star sequence

Cfa-Mir-181-P2a_3p*

mirBase accession

None

Sequence

40- CUCACUGAACAAUGAAUGCA -60

Get sequence