Mir-181-P2a

MirGeneDB ID

Cpi-Mir-181-P2a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-181b-1

Paralogues

Cpi-Mir-181-P1a Cpi-Mir-181-P1b Cpi-Mir-181-P1c Cpi-Mir-181-P2b Cpi-Mir-181-P2c

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xtr-Mir-181-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584765: 3049082-3049142 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2a)

Mir-181-P2a JH584765: 3049082-3049142 [-] UCSC Ensembl
Mir-181-P1a JH584765: 3049277-3049338 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGCAGAGCUUUACUAAAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUAUGUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCCACUUUUUGUGAUCACAAUCA

Get precursor sequence

Structure

        10        20          30        40        50        60 
UUGCAGAGCUUUACUAAAAA--|      AUCAA         CUG          UAACUA 
                      GGUCACA     CAUUCAUUG   UCGGUGGGUU      U
                      CCGGUGU     GUAAGUAAC   AGUCACUCGA      G
ACUAACACUAGUGUUUUUCACC^      CAAC-         A--          ACAGGU 
 .       110       100        90         80          70