Mir-181-P2a

MirGeneDB ID

Loc-Mir-181-P2a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-181-P1a Loc-Mir-181-P1b Loc-Mir-181-P1c Loc-Mir-181-P2b Loc-Mir-181-P2c

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Gmo-Mir-181-P2a1 Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Mal-Mir-181-P2a1 Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Tni-Mir-181-P2a1 Xla-Mir-181-P2a3 Xla-Mir-181-P2a4 Xtr-Mir-181-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG10: 12644069-12644129 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCCGAACAAAUUUCAGCAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUGUGUGGAAAAGCUCACUGAACAAUGAAUGCAACUGUGUCCCAGAUUUCAGCCGCUAAUUUCU

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Structure

        10        20          30        40        50        60 
CCCGAACAAAUUUCAGCAAA--| U    AUCAA         CUG          UAACUG 
                      GG CACA     CAUUCAUUG   UCGGUGGGUU      U
                      CC GUGU     GUAAGUAAC   AGUCACUCGA      G
UCUUUAAUCGCCGACUUUAGAC^ U    CAAC-         A--          AAAGGU 
 .       110       100        90         80          70

Deep sequencing

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Comment

There are Dicer cuts +1 and +2 on the 3p arm.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-181-P2a_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Loc-Mir-181-P2a_3p*

mirBase accession

None

Sequence

40- CUCACUGAACAAUGAAUGCAA -61

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