Mir-181-P2c

MirGeneDB ID

Loc-Mir-181-P2c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-181-P1a Loc-Mir-181-P1b Loc-Mir-181-P1c Loc-Mir-181-P2a Loc-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG6: 12844691-12844752 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGGUGGCAGGGCAUCACCGCGGUCCCAAUCCACAUUCAUCGCUGUCGGUGGGUUGUGCUGCUUGACUCGAACCCGCUGAGCGAUGAGUGAAAACUGUGACCUGACUCUCGAGGCGCCCGGAC

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Structure

        10        20         30        40        50        60  
AGGUGGCAGGGCAUCACCGC-|   C  AUCCA          UG          GUGCUGC 
                     GGUC CA     CAUUCAUCGC  UCGGUGGGUU       \
                     CCAG GU     GUGAGUAGCG  AGUCGCCCAA       U
CAGGCCCGCGGAGCUCUCAGU^   U  CAAAA          --          GCUCAGU 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-181-P2c_5p

mirBase accession

None

Sequence

0- CACAUUCAUCGCUGUCGGUGGGUU -24

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Co-mature sequence

Loc-Mir-181-P2c_3p

mirBase accession

None

Sequence

40- ACCCGCUGAGCGAUGAGUGAAA -62

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