Mir-181-P2c

MirGeneDB ID

Dno-Mir-181-P2c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-181d

Paralogues

Dno-Mir-181-P1a Dno-Mir-181-P1b Dno-Mir-181-P1c Dno-Mir-181-P2a Dno-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(dasNov3)

JH578493: 22107-22165 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P1c JH578493: 21926-21986 [+] UCSC Ensembl
Mir-181-P2c JH578493: 22107-22165 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCGUCCGGCCCACAGCGAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACGGCAGACCCGCCGGGAGAUGAAUGUCACUGUGGCUGGGUCAGACGCGGCCCGGGCGC

Get precursor sequence

Structure

        10        20          30        40        50        60
UCCGUCCGGCCCACAGCGAA--|      AUCA         GUUG          GUGAG 
                      GGUCACA    ACAUUCAUU    UCGGUGGGUU     G
                      UCGGUGU    UGUAAGUAG    GGCCGCCCAG     A
CGCGGGCCCGGCGCAGACUGGG^      CAC-         AG--          ACGGC 
       110       100        90         80          70

Deep sequencing

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3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Dno-Mir-181-P2c_5p

mirBase accession

MIMAT0047697

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

Get sequence

Star sequence

Dno-Mir-181-P2c_3p* (predicted)

mirBase accession

MIMAT0047698

Sequence

38- CCCGCCGGGAGAUGAAUGUCA -59

Get sequence