MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-181-P2c1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-181b-1
Paralogues Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Dre-Mir-181-P1b2  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Dre-Mir-181-P2b2  Dre-Mir-181-P2c2 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr2: 45202237-45202295 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c1)
Mir-181-P2c1 chr2: 45202237-45202295 [-] UCSC Ensembl
Mir-181-P1c1 chr2: 45204644-45204703 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCACCUUCAGUUCUUCAAAGGUCAUAAUCAACAUUCAUUGCUGUCGGUGGGUUUAGUCUUGUAACAGCUCUCUGAACAAUGAAUGUAACUGUGGCCCAGAUUCCAGCCAGCAUUCCUC
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Structure
        10        20          30        40        50        60
CGCACCUUCAGUUCUUCAAA--|      AUCA          CUG    U     UAGUC 
                      GGUCAUA    ACAUUCAUUG   UCGG GGGUU     U
                      CCGGUGU    UGUAAGUAAC   AGUC CUCGA     U
CUCCUUACGACCGACCUUAGAC^      CAA-          A--    U     CAAUG 
       110       100        90         80          70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-181-P2c1_5p

mirBase accessionMIMAT0001270
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Dre-Mir-181-P2c1_3p*

mirBase accessionNone
Sequence
38- CUCUCUGAACAAUGAAUGUAA -59
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