Mir-181-P2c1

MirGeneDB ID

Dre-Mir-181-P2c1

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-181b-1

Paralogues

Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Dre-Mir-181-P1b2 Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Dre-Mir-181-P2a1 Dre-Mir-181-P2a2 Dre-Mir-181-P2b2 Dre-Mir-181-P2c2

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr2: 45202237-45202295 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c1)

Mir-181-P2c1 chr2: 45202237-45202295 [-] UCSC Ensembl
Mir-181-P1c1 chr2: 45204644-45204703 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCACCUUCAGUUCUUCAAAGGUCAUAAUCAACAUUCAUUGCUGUCGGUGGGUUUAGUCUUGUAACAGCUCUCUGAACAAUGAAUGUAACUGUGGCCCAGAUUCCAGCCAGCAUUCCUC

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Structure

        10        20          30        40        50        60
CGCACCUUCAGUUCUUCAAA--|      AUCA          CUG    U     UAGUC 
                      GGUCAUA    ACAUUCAUUG   UCGG GGGUU     U
                      CCGGUGU    UGUAAGUAAC   AGUC CUCGA     U
CUCCUUACGACCGACCUUAGAC^      CAA-          A--    U     CAAUG 
       110       100        90         80          70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-181-P2c1_5p

mirBase accession

MIMAT0001270

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Dre-Mir-181-P2c1_3p*

mirBase accession

None

Sequence

38- CUCUCUGAACAAUGAAUGUAA -59

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