MirGeneDB ID | Cmi-Mir-181-P2c |
Family name |
MIR-181 (all species) |
Seed |
ACAUUCA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-181-P1a
Cmi-Mir-181-P1b
Cmi-Mir-181-P1c
Cmi-Mir-181-P2a
Cmi-Mir-181-P2b
|
Orthologues |
Aca-Mir-181-P2c
Ami-Mir-181-P2c
Bta-Mir-181-P2c
Cfa-Mir-181-P2c
Cja-Mir-181-P2c
Cpi-Mir-181-P2c
Dno-Mir-181-P2c
Dre-Mir-181-P2c1
Dre-Mir-181-P2c2
Eca-Mir-181-P2c
Ete-Mir-181-P2c
Gmo-Mir-181-P2c1
Gmo-Mir-181-P2c2
Hsa-Mir-181-P2c
Laf-Mir-181-P2c
Lch-Mir-181-P2c
Loc-Mir-181-P2c
Mal-Mir-181-P2c1
Mal-Mir-181-P2c2
Mdo-Mir-181-P2c
Mml-Mir-181-P2c
Mmr-Mir-181-P2c
Mmu-Mir-181-P2c
Mun-Mir-181-P2c
Neu-Mir-181-P2c
Oan-Mir-181-P2c
Ocu-Mir-181-P2c
Pab-Mir-181-P2c
Pbv-Mir-181-P2c
Rno-Mir-181-P2c
Sha-Mir-181-P2c
Spt-Mir-181-P2c3
Spt-Mir-181-P2c4
Sto-Mir-181-P2c
Tni-Mir-181-P2c1-v1
Tni-Mir-181-P2c1-v2
Tni-Mir-181-P2c2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636034.1: 193682-193742 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCCUGCAGUUAUCAGUGAAAGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGUGAAUUGUUAGAAAACUCGCUGACCAAUGAAUGGAACUGUGGCUGGAUCACACAGCUUUCGCUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCCUGCAGUUAUCAGUGAA--| AUCAA CU GUGAAU
AGUCACA CAUUCAUUG GUCGGUGGGUU U
UCGGUGU GUAAGUAAC CAGUCGCUCAA G
AACUCGCUUUCGACACACUAGG^ CAAG- -- AAGAUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-181-P2c_5p |
mirBase accession | None |
Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
|
Star sequence |
Cmi-Mir-181-P2c_3p* |
mirBase accession | None |
Sequence |
40- CUCGCUGACCAAUGAAUGGAA -61
Get sequence
|