Mir-181-P1c

MirGeneDB ID

Cmi-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-181-P1a Cmi-Mir-181-P1b Cmi-Mir-181-P2a Cmi-Mir-181-P2b Cmi-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636034.1: 193153-193212 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAUGUGUGGACAGUGAUGACUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUAGAUGAACCAUCGACCGUUGACUGUACCCUGCAGCCCAGUCAGUGACACCUGGACCAG

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Structure

        10         20         30        40        50        60 
AAGAAUGUGUGGACAGUGA-  A-| U   UGA   U      CU       A  UUGGGAU 
                    UG  CU CAG   ACA UCAACG  GUCGGUG GU       \
                    AC  GA GUC   UGU AGUUGC  CAGCUAC CA       U
GACCAGGUCCACAGUGACUG  CC^ C   CCA   C      --       -  AGUAGAU 
.       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-181-P1c_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Cmi-Mir-181-P1c_3p*

mirBase accession

None

Sequence

38- ACCAUCGACCGUUGACUGUACC -60

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