MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-181-P1a  Sto-Mir-181-P1b  Sto-Mir-181-P2a  Sto-Mir-181-P2b  Sto-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01009266.1: 65677-65738 [+]
Precursor
(pre-Mir +30nt flank)
CUCCGCUGCGGAUCAGUGACGACCUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAGUAUAAAUGAAACCAUUGACCGUUGACUGUACCCUGCGGCCGGGAUGGUAACUGCUGUGGAAG
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Structure
        10          20        30        40        50        60  
CUCCGCUGCGGAUCAGUGA--| A  U   UGA   U      CU       A  UUGGAAGU 
                     CG CC CAG   ACA UCAACG  GUCGGUG GU        \
                     GC GG GUC   UGU AGUUGC  CAGUUAC CA        A
GAAGGUGUCGUCAAUGGUAGG^ C  C   CCA   C      --       -  AAGUAAAU 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-181-P1c_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Sto-Mir-181-P1c_3p*
mirBase accessionNone
Sequence 
40- ACCAUUGACCGUUGACUGUACC -62
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