Mir-181-P1c

MirGeneDB ID

Laf-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-181-P1a Laf-Mir-181-P1b Laf-Mir-181-P2a Laf-Mir-181-P2b Laf-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010053.1: 29263468-29263528 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCUGGAGAAUCCACCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGGCAGCACAGGCAAACCAUCGACCGUUGAGUGGACCCCGAGGCCUGGAACUGCCAUCUGCCUGUUG

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Structure

        10          20        30        40        50        60 
UCUCUGGAGAAUCCACCAA--|     G    AA        CU       A   UGGGCAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CCCC  GUGAGUUG  CAGCUAC CAA       C
GUUGUCCGUCUACCGUCAAGG^     G    AG        C-       -   ACGGACA 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Wh

Mature sequence

Laf-Mir-181-P1c_5p

mirBase accession

None

Sequence

0- AACAUUCAACCUGUCGGUGAGUU -23

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Star sequence

Laf-Mir-181-P1c_3p*

mirBase accession

None

Sequence

39- ACCAUCGACCGUUGAGUGGACC -61

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