MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-181-P1c2

Family name MIR-181 (all species)
Seed ACAUUCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-181a-3
Paralogues Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Dre-Mir-181-P1b2  Dre-Mir-181-P1c1  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Dre-Mir-181-P2b2  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Eca-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr3: 34197460-34197519 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1c2)		 Mir-181-P1c2 chr3: 34197460-34197519 [+] UCSC Ensembl
Mir-181-P2c2 chr3: 34197705-34197762 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUUUCAGUGCCCAGGCGAGUCUCAGAGAACAUUCAACGCUGUCGGUGAGUUUGCAAGUGAGAAAAACCAUCGAGUGUUGAGUGUACCCUGCCUCUCGAACACACUCCAUGACCACAC
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGUGUUUCAGUGCCCAGG--|   UCU   AGA           UG      A  UUGCAAG 
                    CGAG   CAG   ACAUUCAACGC  UCGGUG GU       \
                    GCUC   GUC   UGUGAGUUGUG  AGCUAC CA       U
CACACCAGUACCUCACACAA^   UCC   CCA           --      -  AAAAGAG 
.       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-181-P1c2_5p
mirBase accessionMIMAT0001623
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
Star sequence

Dre-Mir-181-P1c2_3p*
mirBase accessionMIMAT0048654
Sequence 
38- ACCAUCGAGUGUUGAGUGUACC -60
Get sequence