MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-181-P1c2

Family name MIR-181 (all species)
Seed ACAUUCA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-181-P1a1  Mal-Mir-181-P1b2  Mal-Mir-181-P1c1  Mal-Mir-181-P2a1  Mal-Mir-181-P2b2  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c2  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884989.1: 303912-303971 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUCAGCCUGAUUUUUUCAAGUCUUGGGGAACAUUCAACGCUGUCGGUGAGUUUGUGACUCAGUGAAACCAUCGAGUGUUGAGUGUACCCUUACACUUGUGCUGACAUCCAUCUCAAAU
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Structure
        10          20        30        40        50        60 
CUGUCAGCCUGAUUUUUU--|    CUU    A           UG      A    GUGAC 
                    CAAGU   GGGG ACAUUCAACGC  UCGGUG GUUU     \
                    GUUCA   UCCC UGUGAGUUGUG  AGCUAC CAAA     U
UAAACUCUACCUACAGUCGU^    CAU    A           --      -    GUGAC 
.       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-181-P1c2_5p

mirBase accessionNone
Sequence
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Mal-Mir-181-P1c2_3p*

mirBase accessionNone
Sequence
38- ACCAUCGAGUGUUGAGUGUACC -60
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