Mir-181-P1c2

MirGeneDB ID

Mal-Mir-181-P1c2

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-181-P1a1 Mal-Mir-181-P1b2 Mal-Mir-181-P1c1 Mal-Mir-181-P2a1 Mal-Mir-181-P2b2 Mal-Mir-181-P2c1 Mal-Mir-181-P2c2

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884989.1: 303912-303971 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGUCAGCCUGAUUUUUUCAAGUCUUGGGGAACAUUCAACGCUGUCGGUGAGUUUGUGACUCAGUGAAACCAUCGAGUGUUGAGUGUACCCUUACACUUGUGCUGACAUCCAUCUCAAAU

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Structure

        10          20        30        40        50        60 
CUGUCAGCCUGAUUUUUU--|    CUU    A           UG      A    GUGAC 
                    CAAGU   GGGG ACAUUCAACGC  UCGGUG GUUU     \
                    GUUCA   UCCC UGUGAGUUGUG  AGCUAC CAAA     U
UAAACUCUACCUACAGUCGU^    CAU    A           --      -    GUGAC 
.       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-181-P1c2_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

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Star sequence

Mal-Mir-181-P1c2_3p*

mirBase accession

None

Sequence

38- ACCAUCGAGUGUUGAGUGUACC -60

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