Mir-181-P2b2

MirGeneDB ID

Mal-Mir-181-P2b2

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-181-P1a1 Mal-Mir-181-P1b2 Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mal-Mir-181-P2a1 Mal-Mir-181-P2c1 Mal-Mir-181-P2c2

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Xtr-Mir-181-P2b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884728.1: 1856785-1856843 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGGCGGUGCUCACUCUUAAGGCCGCAAUAAACAUUCAUUGCUGUCGGUGGGUUUACAUAAGAAUAACUCACUGAUCAAUGAAUGCAGACUGCGGUUCCAACACCUCUGUAACCAACCA

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Structure

        10        20          30        40        50          
CAGGCGGUGCUCACUCUUAA--|      AUAAA         CU           UACAU 
                      GGCCGCA     CAUUCAUUG  GUCGGUGGGUU     \
                      UUGGCGU     GUAAGUAAC  UAGUCACUCAA     A
ACCAACCAAUGUCUCCACAACC^      CAGAC         --           UAAGA 
       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-181-P2b2_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Mal-Mir-181-P2b2_3p*

mirBase accession

None

Sequence

37- CUCACUGAUCAAUGAAUGCAGA -59

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