MirGeneDB ID | Sha-Mir-181-P2b |
Family name |
MIR-181 (all species) |
Seed |
ACAUUCA |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-181-P1a
Sha-Mir-181-P1b
Sha-Mir-181-P1c
Sha-Mir-181-P2a
Sha-Mir-181-P2c
|
Orthologues |
Aca-Mir-181-P2b
Ami-Mir-181-P2b
Bta-Mir-181-P2b
Cfa-Mir-181-P2b
Cja-Mir-181-P2b
Cli-Mir-181-P2b
Cmi-Mir-181-P2b
Cpi-Mir-181-P2b
Cpo-Mir-181-P2b
Dno-Mir-181-P2b
Dre-Mir-181-P2b2
Eca-Mir-181-P2b
Ete-Mir-181-P2b
Gga-Mir-181-P2b
Gja-Mir-181-P2b
Gmo-Mir-181-P2b2
Hsa-Mir-181-P2b
Laf-Mir-181-P2b
Lch-Mir-181-P2b
Loc-Mir-181-P2b
Mal-Mir-181-P2b2
Mdo-Mir-181-P2b
Mml-Mir-181-P2b
Mmr-Mir-181-P2b
Mmu-Mir-181-P2b
Mun-Mir-181-P2b
Neu-Mir-181-P2b
Oan-Mir-181-P2b
Ocu-Mir-181-P2b
Pab-Mir-181-P2b
Pbv-Mir-181-P2b
Rno-Mir-181-P2b
Spt-Mir-181-P2b
Sto-Mir-181-P2b
Tgu-Mir-181-P2b
Tni-Mir-181-P2b1
Xla-Mir-181-P2b3
Xla-Mir-181-P2b4
Xtr-Mir-181-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL834637.1: 2487164-2487224 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUAACUCUGAAAAUUAUAAUGUCUGCAAUAAACAUUCAUUGCUGUCGGUGGGUUUCUGAUCUUAAUCAACUCACUGAUCAAUGAAUGCAAACUGCGGAUCAAAUAAAUAAAGGAGGAAGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUAACUCUGAAAAUUAUAAU--| AUAAA CU UUCUGAU
GUCUGCA CAUUCAUUG GUCGGUGGGU \
UAGGCGU GUAAGUAAC UAGUCACUCA C
ACGAAGGAGGAAAUAAAUAAAC^ CAAAC -- ACUAAUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Sha-Mir-181-P2b_5p |
mirBase accession | None |
Sequence |
0- AACAUUCAUUGCUGUCGGUGGGU -23
Get sequence
|
Star sequence |
Sha-Mir-181-P2b_3p* |
mirBase accession | None |
Sequence |
39- CUCACUGAUCAAUGAAUGCAAA -61
Get sequence
|