MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-181-P2b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-181b-2
Paralogues Xtr-Mir-181-P1a  Xtr-Mir-181-P1b  Xtr-Mir-181-P2a 
Orthologues Aca-Mir-181-P2b  Ami-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cja-Mir-181-P2b  Cli-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Eca-Mir-181-P2b  Ete-Mir-181-P2b  Gga-Mir-181-P2b  Gja-Mir-181-P2b  Gmo-Mir-181-P2b2  Hsa-Mir-181-P2b  Laf-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmr-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Neu-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pab-Mir-181-P2b  Pbv-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Spt-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Tni-Mir-181-P2b1  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chrUn_NW_016683376v1: 1381335-1381394 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2b)
Mir-181-P1b chrUn_NW_016683376v1: 1377170-1377236 [+] UCSC Ensembl
Mir-181-P2b chrUn_NW_016683376v1: 1381335-1381394 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAACAGUACAUAAUGUAAUGGCUGCAAUAAACAUUCAUUGCUGUCGGUGGGUUGUAGUUUAGAAAAGCUCAUUGAUCAAUGAAUGCAAACUGCAGACCACUCCACAAAGGUGCAGCAGG
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Structure
        10         20         30        40        50        60
ACAACAGUACAUAAUGUAA-   -|    AUAAA         CU           GUAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GACGU     GUAAGUAAC  UAGUUACUCGA     U
GGACGACGUGGAAACACCUC   A^    CAAAC         --           AAAGA 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-181-P2b_5p

mirBase accessionMIMAT0003609
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Proposed targets TargetScanVert: xtr-miR-181b
Star sequence

Xtr-Mir-181-P2b_3p*

mirBase accessionNone
Sequence
38- CUCAUUGAUCAAUGAAUGCAAA -60
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