MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-181-P2b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-181b-2
Paralogues Pbv-Mir-181-P1b  Pbv-Mir-181-P1c  Pbv-Mir-181-P2a  Pbv-Mir-181-P2c 
Orthologues Aca-Mir-181-P2b  Ami-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cja-Mir-181-P2b  Cli-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Eca-Mir-181-P2b  Ete-Mir-181-P2b  Gga-Mir-181-P2b  Gja-Mir-181-P2b  Gmo-Mir-181-P2b2  Hsa-Mir-181-P2b  Laf-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmr-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Neu-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pab-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Spt-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Tni-Mir-181-P2b1  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4  Xtr-Mir-181-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE955294.1: 122355-122414 [-]
Clustered miRNAs
(< 50kb from Mir-181-P2b)
Mir-181-P2b KE955294.1: 122355-122414 [-]
Mir-181-P1b KE955294.1: 122527-122588 [-]
Precursor
(pre-Mir +30nt flank)
AGCAGUUCUCCUCAAAUAAUGGCUGCACUCAACAUUCAUUGCUGUCGGUGGGUUUCGGGUUCAGUCAGCCCUCUGGCCAAUGAAUGCAAACUGCGGAUCAAACAGCAGCAAGAUAGAGGC
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Structure
        10         20         30        40        50        60
AGCAGUUCUCCUCAAAUAA-   -|    CUCAA         CU     U     UCGGG 
                    UGG CUGCA     CAUUCAUUG  GUCGG GGGUU     U
                    ACU GGCGU     GUAAGUAAC  CGGUC CCCGA     U
CGGAGAUAGAACGACGACAA   A^    CAAAC         --     U     CUGAC 
.       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-181-P2b_5p

mirBase accessionMIMAT0038977
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Pbv-Mir-181-P2b_3p* (predicted)

mirBase accessionNone
Sequence
38- CCCUCUGGCCAAUGAAUGCAAA -60
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