MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-181-P2b

Family name MIR-181 (all species)
Seed ACAUUCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-181b-2
Paralogues Ami-Mir-181-P1a  Ami-Mir-181-P1b  Ami-Mir-181-P1c  Ami-Mir-181-P2a  Ami-Mir-181-P2c 
Orthologues Aca-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cli-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Ete-Mir-181-P2b  Gga-Mir-181-P2b  Gja-Mir-181-P2b  Gmo-Mir-181-P2b2  Hsa-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pbv-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Spt-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Tni-Mir-181-P2b1  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4  Xtr-Mir-181-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711793.1: 113586-113645 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-181-P2b)
Mir-181-P1b NW_017711793.1: 111753-111815 [+] UCSC
Mir-181-P2b NW_017711793.1: 113586-113645 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCACAGCUCGUGCAUCUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUAGUUUGUACCAACUCACUGAUCAAUGAAUGCAAACUGCGGACCAGAUAGCUAAGAGUGCGUGCU
Get precursor sequence
Structure
        10         20         30        40        50        60
GCACAGCUCGUGCAUCUAA-   -|    AUCAA         CU           UUAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     U
UCGUGCGUGAGAAUCGAUAG   A^    CAAAC         --           CCAUG 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-181-P2b_5p

mirBase accessionMIMAT0038190
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Ami-Mir-181-P2b_3p*

mirBase accessionMIMAT0038192
Sequence
38- CUCACUGAUCAAUGAAUGCAAA -60
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