MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-181-P1a

Family name MIR-181 (all species)
Seed ACAUUCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-181a-1
Paralogues Ami-Mir-181-P1b  Ami-Mir-181-P1c  Ami-Mir-181-P2a  Ami-Mir-181-P2b  Ami-Mir-181-P2c 
Orthologues Aca-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xtr-Mir-181-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017710806.1: 1539186-1539247 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-181-P1a)
Mir-181-P2a NW_017710806.1: 1538992-1539052 [-] UCSC
Mir-181-P1a NW_017710806.1: 1539186-1539247 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGAGUUCUGGUUUUAGUGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAUUUAAAGUGAAAACCAUCGACCGUUGAUUGUACCCUCCAGCUAACCAUCAUCCUCCUUGCUUCA
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Structure
        10         20         30        40        50        60  
GGAGUUCUGGUUUUAGU-    -|  UC  UGA   U      CU       A  UUGGAUUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGA  UC   UGU AGUUGC  CAGCUAC CA        A
ACUUCGUUCCUCCUACUA    U^  CC  CCA   U      --       -  AAAGUGAA 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-181-P1a_5p

mirBase accessionMIMAT0038186
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Ami-Mir-181-P1a_3p*

mirBase accessionMIMAT0038187
Sequence
40- ACCAUCGACCGUUGAUUGUACC -62
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