Mir-181-P1a1

MirGeneDB ID

Mal-Mir-181-P1a1

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-181-P1b2 Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mal-Mir-181-P2a1 Mal-Mir-181-P2b2 Mal-Mir-181-P2c1 Mal-Mir-181-P2c2

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xtr-Mir-181-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884719.1: 1186078-1186140 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCACCAUCAGGUCUGUGUUCGCCCCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGCUAAAUUGAAAAAACCAUCGACCGUUGAUUGUACCCUGUGGCCAGCCUUUGUCACUCCUUGUCUC

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Structure

        10          20        30        40        50        60  
GUCACCAUCAGGUCUGU--|  C   C   UGA   U      CU       A    GAGCUA 
                   GUU GCC CAG   ACA UCAACG  GUCGGUG GUUU      A
                   CGA CGG GUC   UGU AGUUGC  CAGCUAC CAAA      A
CUCUGUUCCUCACUGUUUC^  C   U   CCA   U      --       -    AAAGUU 
 120       110       100        90          80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-181-P1a1_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

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Star sequence

Mal-Mir-181-P1a1_3p*

mirBase accession

None

Sequence

41- ACCAUCGACCGUUGAUUGUACC -63

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