| MirGeneDB ID | Cja-Mir-181-P1a |
|---|---|
| Family name | MIR-181 (all species) |
| Seed | ACAUUCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-181-P1b Cja-Mir-181-P1c Cja-Mir-181-P2a Cja-Mir-181-P2b Cja-Mir-181-P2c |
| Orthologues | Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021933.1: 21952903-21952964 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAAUUCUGAGUUUUGAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUCAAAACCAUCGACCGUUGAUUGUACCCUAUGGCUAACCAUCAUCUACUCCAUGGCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGAAUUCUGAGUUUUGA- -| UC UGA U CU A GGAAUU GGUU GCU AG ACA UCAACG GUCGGUG GUUU \ CCAA CGG UC UGU AGUUGC CAGCUAC CAAA A GCGGUACCUCAUCUACUA U^ UA CCA U -- - ACUAAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-181-P1a_5p |
| mirBase accession | None |
| Sequence |
0- AACAUUCAACGCUGUCGGUGAGUUU -25
Get sequence
|
| Star sequence | Cja-Mir-181-P1a_3p* |
| mirBase accession | None |
| Sequence |
40- ACCAUCGACCGUUGAUUGUACC -62
Get sequence
|
