Mir-181-P1a

MirGeneDB ID

Cja-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-181-P1b Cja-Mir-181-P1c Cja-Mir-181-P2a Cja-Mir-181-P2b Cja-Mir-181-P2c

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021933.1: 21952903-21952964 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAUUCUGAGUUUUGAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUCAAAACCAUCGACCGUUGAUUGUACCCUAUGGCUAACCAUCAUCUACUCCAUGGCG

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Structure

        10         20         30        40        50        60  
AGAAUUCUGAGUUUUGA-    -|  UC  UGA   U      CU       A    GGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GUUU      \
                  CCAA CGG  UC   UGU AGUUGC  CAGCUAC CAAA      A
GCGGUACCUCAUCUACUA    U^  UA  CCA   U      --       -    ACUAAA 
120       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Mir-181-P1a_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

Get sequence

Star sequence

Cja-Mir-181-P1a_3p*

mirBase accession

None

Sequence

40- ACCAUCGACCGUUGAUUGUACC -62

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