Mir-181-P1a

MirGeneDB ID

Bta-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-181a-1

Paralogues

Bta-Mir-181-P1b Bta-Mir-181-P1c Bta-Mir-181-P2a Bta-Mir-181-P2b Bta-Mir-181-P2c

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037343.1: 77762860-77762922 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1a)

Mir-181-P2a NC_037343.1: 77762678-77762738 [-] UCSC Ensembl
Mir-181-P1a NC_037343.1: 77762860-77762922 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAUUCUGAGCUCCGAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAAUCAAAACCAUCGACCGUUGAUUGUACCCUAUGGCCAACCACCAUCUCCACCCGUGGC

Get precursor sequence

Structure

        10         20         30        40        50        60  
AGAAUUCUGAGCUCCGA-    -|  UC  UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        A
                  CCAA CGG  UC   UGU AGUUGC  CAGCUAC CA        A
CGGUGCCCACCUCUACCA    C^  UA  CCA   U      --       -  AAACUAAA 
 120       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-181-P1a_5p

mirBase accession

MIMAT0003543

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-181a

Star sequence

Bta-Mir-181-P1a_3p*

mirBase accession

None

Sequence

41- ACCAUCGACCGUUGAUUGUACC -63

Get sequence