MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-181-P1a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-181a-1
Paralogues Xtr-Mir-181-P1b  Xtr-Mir-181-P2a  Xtr-Mir-181-P2b 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr4: 101423858-101423919 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a)
Mir-181-P2a chr4: 101423401-101423461 [-] UCSC Ensembl
Mir-181-P1a chr4: 101423858-101423919 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAACUUUGUUUGACAUGGCUACUUUAGUGAACAUUCAACGCUGUCGGUGAGUUUGGUAUCUAAAGGCAAACCAUCGAUCGUUGACUGUACAUUACGGCAAUGCCAGUAACUUCUGUCUCCA
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Structure
        10             20        30        40        50        60  
AUAACUUUGUUUGACAUG-----|  ACUU     A   U      CU       A  UUGGUAUC 
                       GCU    UAGUG ACA UCAACG  GUCGGUG GU        \
                       CGG    AUUAC UGU AGUUGC  UAGCUAC CA        U
ACCUCUGUCUUCAAUGACCGUAA^  C---     A   C      --       -  AACGGAAA 
120       110       100           90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-181-P1a_5p

mirBase accessionMIMAT0003625
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Proposed targets TargetScanVert: xtr-miR-181a-5p
Star sequence

Xtr-Mir-181-P1a_3p*

mirBase accessionMIMAT0003626
Sequence
40- ACCAUCGAUCGUUGACUGUACA -62
Get sequence
Proposed targets TargetScanVert: xtr-miR-181a-1-3p