MirGeneDB ID | Pab-Mir-181-P1a |
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Family name | MIR-181 (all species) |
Seed | ACAUUCA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-181-P1b Pab-Mir-181-P1c Pab-Mir-181-P2a Pab-Mir-181-P2b Pab-Mir-181-P2c |
Orthologues | Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 50742117-50742178 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGAAUUCUGAGUUUUGAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUCAAAACCAUCGACCGUUGAUUGUACCCUAUGGCUAACCAUCAUCUACUCCAUGGUGGet precursor sequence |
Structure | 10 20 30 40 50 60 AGAAUUCUGAGUUUUGA- -| UC UGA U CU A UUGGAAUU GGUU GCU AG ACA UCAACG GUCGGUG GU \ CCAA CGG UC UGU AGUUGC CAGCUAC CA A GUGGUACCUCAUCUACUA U^ UA CCA U -- - AAACUAAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-181-P1a_5p |
mirBase accession | None |
Sequence |
0- AACAUUCAACGCUGUCGGUGAGU -23
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|
Star sequence | Pab-Mir-181-P1a_3p* |
mirBase accession | None |
Sequence |
40- ACCAUCGACCGUUGAUUGUACC -62
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