MirGeneDB ID | Pab-Mir-181-P1b |
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Family name | MIR-181 (all species) |
Seed | ACAUUCA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-181-P1a Pab-Mir-181-P1c Pab-Mir-181-P2a Pab-Mir-181-P2b Pab-Mir-181-P2c |
Orthologues | Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054692.2: 115989545-115989604 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UAUCAGGCCAGCCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAACCACUGACCGUUGACUGUACCUUGGGGUCCUUACAGACGACACUACAUUUCGet precursor sequence |
Structure | 10 20 30 40 50 60 UAUCAGGCCAGCCUUCA--| A U CU A UUGGGAU GAGGACUCCAAGG ACA UCAACG GUCGGUG GU \ UUCCUGGGGUUCC UGU AGUUGC CAGUCAC CA U CUUUACAUCACAGCAGACA^ A C -- - AAAAAGU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Mature sequence | Pab-Mir-181-P1b_5p |
mirBase accession | None |
Sequence |
0- AACAUUCAACGCUGUCGGUGAGU -23
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|
Star sequence | Pab-Mir-181-P1b_3p* |
mirBase accession | None |
Sequence |
38- ACCACUGACCGUUGACUGUACC -60
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