Mir-181-P1b

MirGeneDB ID

Oan-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-181a-2

Paralogues

Oan-Mir-181-P1a Oan-Mir-181-P1c Oan-Mir-181-P2a Oan-Mir-181-P2b Oan-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Eca-Mir-181-P1b Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041731.1: 45803555-45803615 [+]

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P1b NC_041731.1: 45803555-45803615 [+]
Mir-181-P2b NC_041731.1: 45805053-45805112 [+]

Precursor
(pre-Mir +30nt flank)

GCGGCAAGCAAUCUUCAGAGAACCGCAGGGAACAUUCAACGCUGUCGGUGAGUUUGAGAUAGAGAAGAAACCAUCGACCGUUGACUGUACCUUGAGGUUUAUCACAGACACAUUGUUAAAU

Get precursor sequence

Structure

        10          20        30        40        50        60 
GCGGCAAGCAAUCUUCA-  -|    G     A   U      CU       A  UUGAGAU 
                  GA GAACC CAGGG ACA UCAACG  GUCGGUG GU       A
                  CU UUUGG GUUCC UGU AGUUGC  CAGCUAC CA       G
UAAAUUGUUACACAGACA  A^    A     A   C      --       -  AAGAAGA 
 .       110       100        90        80           70