Mir-181-P1b

MirGeneDB ID

Eca-Mir-181-P1b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-181a

Paralogues

Eca-Mir-181-P1a Eca-Mir-181-P1c Eca-Mir-181-P2a Eca-Mir-181-P2b Eca-Mir-181-P2c

Orthologues

Aca-Mir-181-P1b Ami-Mir-181-P1b Bta-Mir-181-P1b Cfa-Mir-181-P1b Cja-Mir-181-P1b Cli-Mir-181-P1b Cmi-Mir-181-P1b Cpi-Mir-181-P1b Cpo-Mir-181-P1b Dno-Mir-181-P1b Dre-Mir-181-P1b2 Ete-Mir-181-P1b Gga-Mir-181-P1b Gja-Mir-181-P1b Gmo-Mir-181-P1b2 Hsa-Mir-181-P1b Laf-Mir-181-P1b Lch-Mir-181-P1b Loc-Mir-181-P1b Mal-Mir-181-P1b2 Mdo-Mir-181-P1b Mml-Mir-181-P1b Mmr-Mir-181-P1b Mmu-Mir-181-P1b Mun-Mir-181-P1b Neu-Mir-181-P1b Oan-Mir-181-P1b Ocu-Mir-181-P1b Pab-Mir-181-P1b Pbv-Mir-181-P1b Rno-Mir-181-P1b Sha-Mir-181-P1b Spt-Mir-181-P1b Sto-Mir-181-P1b Tgu-Mir-181-P1b Tni-Mir-181-P1b1 Xla-Mir-181-P1b3 Xla-Mir-181-P1b4 Xtr-Mir-181-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009172.1: 29260045-29260104 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1b)

Mir-181-P1b CM009172.1: 29260045-29260104 [+] UCSC Ensembl
Mir-181-P2b CM009172.1: 29261301-29261360 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAGGACCCAGCCUUCAGAGGACUCCAAGGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUUGAAAAAACCACCGACCGUUGACUGUACCUUGGGGUCCUUACAGACAACACUACAUUUC

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Structure

        10          20        30        40        50        60 
CCAGGACCCAGCCUUCA--|            A   U      CU       A  UUGGGAU 
                   GAGGACUCCAAGG ACA UCAACG  GUCGGUG GU       \
                   UUCCUGGGGUUCC UGU AGUUGC  CAGCCAC CA       U
CUUUACAUCACAACAGACA^            A   C      --       -  AAAAAGU 
.       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-181-P1b_5p

mirBase accession

MIMAT0013178

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Eca-Mir-181-P1b_3p*

mirBase accession

None

Sequence

38- ACCACCGACCGUUGACUGUACC -60

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