Mir-181-P1a

MirGeneDB ID

Eca-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-181a-2

Paralogues

Eca-Mir-181-P1b Eca-Mir-181-P1c Eca-Mir-181-P2a Eca-Mir-181-P2b Eca-Mir-181-P2c

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009177.1: 27734356-27734417 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAAUUCUGAGUCUGAGGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUCAAAACCAUCGACCGUUGAUUGUGCCCUGUGGCUAGCCAUCCUCUCCUCCAUGGCU

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Structure

        10         20         30        40        50        60  
AGAAUUCUGAGUCUGAG-    -|  U   UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU CAG   ACA UCAACG  GUCGGUG GU        \
                  CCGA CGG GUC   UGU AGUUGC  CAGCUAC CA        A
UCGGUACCUCCUCUCCUA    U^  U   CCG   U      --       -  AAACUAAA 
120       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-181-P1a_5p

mirBase accession

MIMAT0013178

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Eca-Mir-181-P1a_3p*

mirBase accession

None

Sequence

40- ACCAUCGACCGUUGAUUGUGCC -62

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