Mir-181-P1a

MirGeneDB ID

Gga-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-181a-1

Paralogues

Gga-Mir-181-P1b Gga-Mir-181-P2a Gga-Mir-181-P2b

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

8: 2387159-2387220 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1a)

Mir-181-P1a 8: 2387159-2387220 [+] UCSC Ensembl
Mir-181-P2a 8: 2387343-2387402 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAGUUCUCUUGUAGUGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUUAAGUGAAAACCAUCGACCGUUGAUUGUACCCUCCAGCUAACCAUCCUCCUCCUUACUUCA

Get precursor sequence

Structure

        10         20         30        40        50        60  
UGGAGUUCUCUUGUAGU-    -|  UC  UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGA  UC   UGU AGUUGC  CAGCUAC CA        U
ACUUCAUUCCUCCUCCUA    U^  CC  CCA   U      --       -  AAAGUGAA 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-181-P1a_5p

mirBase accession

MIMAT0001168

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-181a-5p
miRDB: MIMAT0001168

Star sequence

Gga-Mir-181-P1a_3p*

mirBase accession

MIMAT0001150

Sequence

40- ACCAUCGACCGUUGAUUGUACC -62

Get sequence

Proposed targets

TargetScanVert: gga-miR-181a-3p
miRDB: MIMAT0001150