MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-181-P1a1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-181a-1
Paralogues Gmo-Mir-181-P1b2  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Gmo-Mir-181-P2a1  Gmo-Mir-181-P2b2  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cfa-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Hsa-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xtr-Mir-181-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1671: 810401-810466 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a1)
Mir-181-P1a1 GeneScaffold_1671: 810401-810466 [+] UCSC Ensembl
Mir-181-P2a1 GeneScaffold_1671: 810721-810781 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGCCGUCAAGUCUGUGCUCGCCCCAGUAAACAUUCAACGCUGUCGGUGAGUUUGGGAUUAAAUUGGCACAAAACCAUCGACCGUUGAUUGUACCCUGUGGCCAGCCCUUGUCCCUCCAUGCUGU
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Structure
        10          20        30        40        50        60    
CUCGCCGUCAAGUCUGU--|  C   C   UAA   U      CU       A    GGGAUUAA 
                   GCU GCC CAG   ACA UCAACG  GUCGGUG GUUU        \
                   CGA CGG GUC   UGU AGUUGC  CAGCUAC CAAA        A
UGUCGUACCUCCCUGUUCC^  C   U   CCA   U      --       -    ACACGGUU 
    120       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-181-P1a1_5p

mirBase accessionMIMAT0044090
Sequence
0- AACAUUCAACGCUGUCGGUGAGUUU -25
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Star sequence

Gmo-Mir-181-P1a1_3p*

mirBase accessionMIMAT0044133
Sequence
44- ACCAUCGACCGUUGAUUGUACC -66
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