Mir-181-P1a

MirGeneDB ID

Cmi-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-181-P1b Cmi-Mir-181-P1c Cmi-Mir-181-P2a Cmi-Mir-181-P2b Cmi-Mir-181-P2c

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635861.1: 13132643-13132704 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACGUCAGAAAUGUACUGGUGGUUUCAGGGAACAUUCAACGCUGUCGGUGAGUUUGAUGCUAUUGGAGAAACCAUCGACCGUUGAUUGUACCUUGUAUCCAGCCUUCACCUGCUUCUGGGCA

Get precursor sequence

Structure

        10          20        30        40        50        60  
GACGUCAGAAAUGUACU-  -|  UUU     A   U      CU       A  UUGAUGCU 
                  GG UGG   CAGGG ACA UCAACG  GUCGGUG GU        \
                  CC ACC   GUUCC UGU AGUUGC  CAGCUAC CA        A
ACGGGUCUUCGUCCACUU  G^  UAU     A   U      --       -  AAGAGGUU 
120       110       100        90        80           70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-181-P1a_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Star sequence

Cmi-Mir-181-P1a_3p*

mirBase accession

None

Sequence

40- ACCAUCGACCGUUGAUUGUACC -62

Get sequence