Mir-181-P2b

MirGeneDB ID

Cmi-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-181-P1a Cmi-Mir-181-P1b Cmi-Mir-181-P1c Cmi-Mir-181-P2a Cmi-Mir-181-P2c

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636038.1: 923264-923325 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCCAACACUUGUAUCAAAAGGUUGCAAUAAACAUUCAUUGCUGUCGGUGGGUUUUUAAUUUUUGAGCAACUCACUGAUCAGUGAAUGCAAACUGCAGCCCCAAAAUCACCAUUUUGUGCAC

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Structure

        10        20          30        40        50        60 
AUCCAACACUUGUAUCAAAA--|      AUAAA         CU           UUUAAU 
                      GGUUGCA     CAUUCAUUG  GUCGGUGGGUU      U
                      CCGACGU     GUAAGUGAC  UAGUCACUCAA      U
CACGUGUUUUACCACUAAAACC^      CAAAC         --           CGAGUU 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-181-P2b_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Cmi-Mir-181-P2b_3p* (predicted)

mirBase accession

None

Sequence

40- CUCACUGAUCAGUGAAUGCAAA -62

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