MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-181-P2b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-181b-2
Paralogues Cli-Mir-181-P1a  Cli-Mir-181-P1b  Cli-Mir-181-P2a 
Orthologues Aca-Mir-181-P2b  Ami-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cja-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Eca-Mir-181-P2b  Ete-Mir-181-P2b  Gga-Mir-181-P2b  Gja-Mir-181-P2b  Gmo-Mir-181-P2b2  Hsa-Mir-181-P2b  Laf-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmr-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Neu-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pab-Mir-181-P2b  Pbv-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Spt-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Tni-Mir-181-P2b1  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4  Xtr-Mir-181-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold686: 918309-918368 [-]
Clustered miRNAs
(< 50kb from Mir-181-P2b)
Mir-181-P2b scaffold686: 918309-918368 [-]
Mir-181-P1b scaffold686: 919231-919290 [-]
Precursor
(pre-Mir +30nt flank)
CUGCGUCUUCAGCAUCUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUCUUUUCUGUCAACUCACUGAUCAAUGAAUGCAAACUGCGGACCAGCCAGCUCGGAGAGCGCAGC
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Structure
        10         20         30        40        50        60
CUGCGUCUUCAGCAUCUAA-   -|    AUCAA         CU           UUCUU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     U
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAA     U
CGACGCGAGAGGCUCGACCG   A^    CAAAC         --           CUGUC 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-181-P2b_5p

mirBase accessionMIMAT0038553
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Cli-Mir-181-P2b_3p*

mirBase accessionMIMAT0038555
Sequence
38- CUCACUGAUCAAUGAAUGCAAA -60
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