Mir-181-P2b

MirGeneDB ID

Cpo-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-181b-2

Paralogues

Cpo-Mir-181-P1a Cpo-Mir-181-P1b Cpo-Mir-181-P1c Cpo-Mir-181-P2a

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_27: 9386137-9386196 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-181-P2b)

Mir-181-P2b scaffold_27: 9386137-9386196 [-] UCSC
Mir-181-P1b scaffold_27: 9387694-9387753 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CCCCAACUGGAUGCACUGAUGGCUGCACUCAACAUUCAUUGCUGUCGGUGGGUUUGAAUCUGAAUUGACUCACUGAUCAAUGAAUGCAAACUGCGGACCACACAACCCAAGGAAACCAAA

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Structure

        10         20         30        40        50        60
CCCCAACUGGAUGCACUGA-   -|    CUCAA         CU           UGAAU 
                    UGG CUGCA     CAUUCAUUG  GUCGGUGGGUU     C
                    ACC GGCGU     GUAAGUAAC  UAGUCACUCAG     U
AAACCAAAGGAACCCAACAC   A^    CAAAC         --           UUAAG 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-181-P2b_5p

mirBase accession

MIMAT0047043

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Cpo-Mir-181-P2b_3p*

mirBase accession

MIMAT0047045

Sequence

38- CUCACUGAUCAAUGAAUGCAAA -60

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