Mir-181-P2b

MirGeneDB ID

Bta-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-181b-2

Paralogues

Bta-Mir-181-P1a Bta-Mir-181-P1b Bta-Mir-181-P1c Bta-Mir-181-P2a Bta-Mir-181-P2c

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Cfa-Mir-181-P2b Cja-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Eca-Mir-181-P2b Ete-Mir-181-P2b Gga-Mir-181-P2b Gja-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Laf-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmr-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Neu-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pab-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037338.1: 95710203-95710262 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2b)

Mir-181-P1b NC_037338.1: 95709011-95709070 [+] UCSC Ensembl
Mir-181-P2b NC_037338.1: 95710203-95710262 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACCAACUGAAAACACUGAUGGCUGCACUCAACAUUCAUUGCUGUCGGUGGGUUUGACUUUGAAUCAACUCACUGAUCAAUGAAUGUAAACUGCGGACCAAACAACCCAAGGGAAGCAAA

Get precursor sequence

Structure

        10         20         30        40        50        60
CACCAACUGAAAACACUGA-   -|    CUCA          CU           UGACU 
                    UGG CUGCA    ACAUUCAUUG  GUCGGUGGGUU     U
                    ACC GGCGU    UGUAAGUAAC  UAGUCACUCAA     U
AAACGAAGGGAACCCAACAA   A^    CAAA          --           CUAAG 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-181-P2b_5p

mirBase accession

MIMAT0003793

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Proposed targets

TargetScanVert: bta-miR-181b

Star sequence

Bta-Mir-181-P2b_3p*

mirBase accession

None

Sequence

38- CUCACUGAUCAAUGAAUGUAAA -60

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