Mir-181-P1c

MirGeneDB ID

Bta-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-181c

Paralogues

Bta-Mir-181-P1a Bta-Mir-181-P1b Bta-Mir-181-P2a Bta-Mir-181-P2b Bta-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037334.1: 11811475-11811535 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1c)

Mir-181-P2c NC_037334.1: 11811294-11811353 [-] UCSC Ensembl
Mir-181-P1c NC_037334.1: 11811475-11811535 [-] UCSC Ensembl
Mir-23-P3 NC_037334.1: 11838711-11838769 [+] UCSC Ensembl
Mir-27-P3 NC_037334.1: 11838890-11838950 [+] UCSC Ensembl
Mir-24-P3 NC_037334.1: 11839043-11839102 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCCCCAAGGAGUUGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGGCAGCUCAGGCAAACCAUCGACCGUUGAGUGGACCCCGAGGCCUGGAACUGCCGUCCACCCACCC

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Structure

        10          20        30        40        50        60 
CCCCCCAAGGAGUUGCCAA--|     G    AA        CU       A   UGGGCAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CCCC  GUGAGUUG  CAGCUAC CAA       C
CCCACCCACCUGCCGUCAAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-181-P1c_5p

mirBase accession

MIMAT0003817

Sequence

0- AACAUUCAACCUGUCGGUGAGUU -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-181c

Star sequence

Bta-Mir-181-P1c_3p*

mirBase accession

None

Sequence

39- ACCAUCGACCGUUGAGUGGACC -61

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