Mir-181-P1c

MirGeneDB ID

Aca-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-181a-3

Paralogues

Aca-Mir-181-P1a Aca-Mir-181-P1b Aca-Mir-181-P2a Aca-Mir-181-P2b Aca-Mir-181-P2c

Orthologues

Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

2: 77116241-77116302 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUAUCUGGAGAAGAUAAAAGGUCUUGGGAAACAUUCAACGCUGUCGGUGAGUUUUGUCAAUGAAGUCAAACCAUCGACUGUUGAGUGUACCCUGCGGCUUUUACAAACACUGCCCAUGAAG

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Structure

        10          20        30        40        50        60  
CAUAUCUGGAGAAGAUA--|      U    AA          CU       A  UUUGUCAA 
                   AAAGGUC UGGG  ACAUUCAACG  GUCGGUG GU        \
                   UUUUCGG GUCC  UGUGAGUUGU  CAGCUAC CA        U
GAAGUACCCGUCACAAACA^      C    CA          --       -  AACUGAAG 
120       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-181-P1c_5p

mirBase accession

MIMAT0021809

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Aca-Mir-181-P1c_3p*

mirBase accession

None

Sequence

40- ACCAUCGACUGUUGAGUGUACC -62

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